{ "_id": "6a644fe2059529545f575b48", "Type": "Package", "Package": "GerminaR", "Title": "Indices and Graphics for Assess Seed Germination Process", "Version": "2.1.6", "Description": "A collection of different indices and visualization\ntechniques for evaluate the seed germination process in\necophysiological studies (Lozano-Isla et al. 2019)\n.", "Authors@R": "c(\nperson(\"Flavio\", \"Lozano-Isla\", email = \"flozanoisla@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0714-669X\")),\nperson(\"Omar\", \"Benites Alfaro\", email = \"obacc07@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-6852-9598\")),\nperson(\"Marcelo F.\", \"Pompelli\", email = \"mpompelli@gmail.com\", role = c(\"aut\",\"ths\"), comment = c(ORCID = \"0000-0002-4408-6374\")),\nperson(\"Denise\", \"Garcia de Santana\", email = \"denise.santana@ufu.br\", role = \"aut\"),\nperson(\"Marli A.\", \"Ranal\", email = \"ranal@ufu.br\", role = \"aut\"),\nperson(\"Federal University of Pernambuco\", role = \"cph\", comment = \"Register of application\"),\nperson(\"Federal Rural University of Pernambuco\", role = \"cph\", comment = \"Post Graduate Program\"),\nperson(\"Inkaverse\", role = c(\"ctb\"))\n)", "URL": "https://germinar.inkaverse.com/,\nhttps://github.com/flavjack/germinar", "BugReports": "https://github.com/flavjack/germinar/issues", "License": "GPL-3 | file LICENSE", "VignetteBuilder": "knitr, quarto", "LazyData": "true", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "SystemRequirements": "pandoc", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev zlib1g-dev", "Repository": "https://flavjack.r-universe.dev", "Date/Publication": "2026-05-05 15:24:33 UTC", "RemoteUrl": "https://github.com/flavjack/germinar", "RemoteRef": "HEAD", "RemoteSha": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-25 05:46:11 UTC", "User": "root" }, "Author": "Flavio Lozano-Isla [aut, cre] (ORCID:\n),\nOmar Benites Alfaro [aut] (ORCID:\n),\nMarcelo F. Pompelli [aut, ths] (ORCID:\n),\nDenise Garcia de Santana [aut],\nMarli A. Ranal [aut],\nFederal University of Pernambuco [cph] (Register of application),\nFederal Rural University of Pernambuco [cph] (Post Graduate Program),\nInkaverse [ctb]", "Maintainer": "Flavio Lozano-Isla ", "_user": "flavjack", "_type": "src", "_file": "GerminaR_2.1.6.tar.gz", "_fileid": "https://r2.ropensci.org/2559df472e6b360015db2aa254326910e22e17af30cbdb7f7aa55cb8e7f09f47", "_filesize": 2065907, "_sha256": "2559df472e6b360015db2aa254326910e22e17af30cbdb7f7aa55cb8e7f09f47", "_expires": "2026-11-02T05:55:44.000Z", "_created": "2026-07-25T05:46:11.000Z", "_published": "2026-07-25T05:55:46.005Z", "_jobs": [ { "job": 89648901787, "time": 168, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8616153284" }, { "job": 89648901770, "time": 179, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8616155149" }, { "job": 89648901790, "time": 204, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8616201370" }, { "job": 89648901798, "time": 197, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8616205015" }, { "job": 89648570554, "time": 249, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8616125625" }, { "job": 89648901783, "time": 153, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8616150946" }, { "job": 89648901802, "time": 127, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8616147223" }, { "job": 89648901819, "time": 99, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "8616142683" }, { "job": 89648901822, "time": 98, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8616142241" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454", "_status": "success", "_upstream": "https://github.com/flavjack/germinar", "_commit": { "id": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "author": "flozanoisla ", "committer": "flozanoisla ", "message": "updt\n", "time": 1777994673 }, "_maintainer": { "name": "Flavio Lozano-Isla", "email": "flozanoisla@gmail.com", "login": "flavjack", "linkedin": "in/flavjack", "orcid": "0000-0002-0714-669X", "description": "Agronomist | Plant breeder", "uuid": 7735493 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "shiny", "role": "Depends" }, { "package": "agricolae", "role": "Depends" }, { "package": "ggplot2", "role": "Depends" }, { "package": "dplyr", "role": "Depends" }, { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "tidyr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "gsheet", "role": "Suggests" }, { "package": "cowplot", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "bookdown", "role": "Suggests" }, { "package": "quarto", "role": "Suggests" }, { "package": "inti", "role": "Suggests" } ], "_owner": "flavjack", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-43", "n": 8 }, { "week": "2026-17", "n": 3 }, { "week": "2026-19", "n": 1 } ], "_tags": [ { "name": "8d984db67", "date": "2025-10-21" } ], "_topics": [ "germianaquant", "inkaverse", "plant-science", "seed-germination", "shinyapp" ], "_stars": 5, "_contributors": [ { "user": "flavjack", "count": 19, "uuid": 7735493 }, { "user": "omarbenites", "count": 16, "uuid": 5264796 }, { "user": "fannydolores", "count": 3, "uuid": 26516154 } ], "_userbio": { "uuid": 7735493, "type": "user", "name": "Flavio Lozano-Isla", "followers": 44, "description": "Agronomist | Plant breeder" }, "_downloads": { "count": 390, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GerminaR" }, "_mentions": 2, "_devurl": "https://github.com/flavjack/germinar", "_pkgdown": "https://germinar.inkaverse.com/", "_searchresults": 105, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GerminaR.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/flavjack/germinar", "_realowner": "flavjack", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2016-12-24" }, { "version": "1.1", "date": "2017-03-08" }, { "version": "1.2", "date": "2017-10-25" }, { "version": "1.3", "date": "2019-04-18" }, { "version": "1.4", "date": "2020-03-01" }, { "version": "1.4.2", "date": "2020-03-28" }, { "version": "2.0.0", "date": "2020-09-01" }, { "version": "2.0.1", "date": "2020-10-25" }, { "version": "2.1.1", "date": "2021-04-23" }, { "version": "2.1.2", "date": "2021-06-11" }, { "version": "2.1.3", "date": "2021-10-10" }, { "version": "2.1.4", "date": "2022-05-18" }, { "version": "2.1.5", "date": "2025-03-05" }, { "version": "2.1.6", "date": "2025-10-21" } ], "_exports": [ "%>%", "fplot", "ger_ASG", "ger_boxp", "ger_CVG", "ger_GRP", "ger_GRS", "ger_GSP", "ger_intime", "ger_MGR", "ger_MGT", "ger_SDG", "ger_summary", "ger_SYN", "ger_testcomp", "ger_UNC", "ger_VGT", "GerminaQuant", "gquant_analysis", "osmp", "rep_row", "textcolor", "webTable" ], "_datasets": [ { "name": "prosopis", "title": "Germination under different osmotic potentials and temperatures.", "object": "prosopis", "class": [ "data.frame" ], "fields": [ "rep", "nacl", "temp", "seeds", "D0", "D1", "D2", "D3", "D4", "D5", "D6", "D7", "D8", "D9", "D10" ], "rows": 80, "table": true, "tojson": true } ], "_help": [ { "page": "fplot", "title": "Plot line or bar graphic", "topics": [ "fplot" ] }, { "page": "ger_ASG", "title": "ArcSin of Germination Percentage", "topics": [ "ger_ASG" ] }, { "page": "ger_boxp", "title": "Boxplot graphic", "topics": [ "ger_boxp" ] }, { "page": "ger_CVG", "title": "Coefficient of Variance of the Mean Germination Time", "topics": [ "ger_CVG" ] }, { "page": "ger_GRP", "title": "Germination Seed Percentage", "topics": [ "ger_GRP" ] }, { "page": "ger_GRS", "title": "Germinated Seed Number", "topics": [ "ger_GRS" ] }, { "page": "ger_GSP", "title": "Germination Speed", "topics": [ "ger_GSP" ] }, { "page": "ger_intime", "title": "Cumulative sum of germination by period of time for line graphic", "topics": [ "ger_intime" ] }, { "page": "ger_MGR", "title": "Mean Germination Rate", "topics": [ "ger_MGR" ] }, { "page": "ger_MGT", "title": "Mean Germination Time", "topics": [ "ger_MGT" ] }, { "page": "ger_SDG", "title": "Standard deviation of the Mean Germination Time", "topics": [ "ger_SDG" ] }, { "page": "ger_summary", "title": "Summary of Germination indices", "topics": [ "ger_summary" ] }, { "page": "ger_SYN", "title": "Germination Synchronization Index", "topics": [ "ger_SYN" ] }, { "page": "ger_testcomp", "title": "Multiple comparison test", "topics": [ "ger_testcomp" ] }, { "page": "ger_UNC", "title": "Germination Uncertainty", "topics": [ "ger_UNC" ] }, { "page": "ger_VGT", "title": "Variance of the Mean Germination Time", "topics": [ "ger_VGT" ] }, { "page": "GerminaQuant", "title": "GerminaQuant for R", "concept": [ "GerminaR" ], "topics": [ "GerminaQuant" ] }, { "page": "gquant_analysis", "title": "GerminaQuant data analysis", "topics": [ "gquant_analysis" ] }, { "page": "osmp", "title": "Osmotic potential calculator", "topics": [ "osmp" ] }, { "page": "prosopis", "title": "Germination under different osmotic potentials and temperatures.", "topics": [ "prosopis" ] }, { "page": "rep_row", "title": "Repeated Rows in a data matrix", "topics": [ "rep_row" ] }, { "page": "textcolor", "title": "Colourise text for display in the terminal.", "topics": [ "textcolor" ] }, { "page": "webTable", "title": "Web table", "topics": [ "webTable" ] } ], "_pkglogo": "https://github.com/flavjack/germinar/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/flavjack/germinar/raw/HEAD/README.md", "_rundeps": [ "agricolae", "AlgDesign", "base64enc", "bslib", "cachem", "cli", "cluster", "commonmark", "cpp11", "crosstalk", "digest", "dplyr", "DT", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "memoise", "mime", "nlme", "otel", "pillar", "pkgconfig", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "S7", "sass", "scales", "shiny", "sourcetools", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "xtable", "yaml" ], "_vignettes": [ { "source": "GerminaQuant.Rmd", "filename": "GerminaQuant.html", "title": "GerminaQuant", "engine": "knitr::rmarkdown", "headings": [ "App modules", "Data processing", "Fieldbook", "Germination", "Statistics", "Graphics", "InTime", "References" ], "created": "2020-11-14 19:47:12", "modified": "2026-04-20 14:08:36", "commits": 12 }, { "source": "GerminaR.Rmd", "filename": "GerminaR.html", "title": "GerminaR", "engine": "knitr::rmarkdown", "headings": [ "Punctual analysis of germination", "Germination percentage", "Mean germination time", "Cumulative analysis of germination", "In time analysis for NaCl", "In time analysis for temperature", "Using ggplot2", "References" ], "created": "2016-07-04 02:14:52", "modified": "2025-10-20 05:55:57", "commits": 34 }, { "source": "introduction.Rmd", "filename": "introduction.html", "title": "Seed germination process", "author": "Flavio Lozano-Isla", "engine": "knitr::rmarkdown", "headings": [ "Seed germination process", "Seed germination indices", "Fieldbook preparation", "Data organization", "Data collection", "Germination analysis", "References" ], "created": "2021-06-09 10:52:13", "modified": "2026-04-21 14:40:32", "commits": 11 } ], "_score": 6.9754318085092635, "_indexed": true, "_nocasepkg": "germinar", "_universes": [ "flavjack" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.1.6", "date": "2026-07-25T05:48:45.000Z", "distro": "resolute", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/43c6b969c25b12df314c4f1295bb6d8e9b398a04beac06acb1c37a000aed75b0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" }, { "r": "4.6.1", "os": "linux", "version": "2.1.6", "date": "2026-07-25T05:48:54.000Z", "distro": "resolute", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/b6903944a0f6c54698a10d58884a6ede3303dde1a0f20be5e9e336b30aec18d1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" }, { "r": "4.5.3", "os": "mac", "version": "2.1.6", "date": "2026-07-25T05:53:47.000Z", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/0055c6c8ed8c9b16b44c513c971072e6fc71e15a9ce049919a95e2866fe7714c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" }, { "r": "4.6.1", "os": "mac", "version": "2.1.6", "date": "2026-07-25T05:54:06.000Z", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/ee0532b216b13d15e447d861eb9d0e894240c959552997636be5b6473f7208bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" }, { "r": "4.6.0", "os": "wasm", "version": "2.1.6", "date": "2026-07-25T05:49:00.000Z", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/4a4ebb080dac146aa9f8426c237c9afad9b6ef41d0e1761155ed8657c05c7a02", "status": "success", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" }, { "r": "4.7.0", "os": "win", "version": "2.1.6", "date": "2026-07-25T05:47:54.000Z", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/9b273ad266eee39963939ce9fe4441ead9a552b25813d19b172a0d4d338a544a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" }, { "r": "4.5.3", "os": "win", "version": "2.1.6", "date": "2026-07-25T05:47:29.000Z", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/aff3fc3a85042890f8af16c91a7d04797e2a1cfe4c40886418f4b615f2d3bc02", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" }, { "r": "4.6.1", "os": "win", "version": "2.1.6", "date": "2026-07-25T05:47:32.000Z", "commit": "e46e6f3125b0a28ee3ad08401944b745ccb25ccb", "fileid": "https://r2.ropensci.org/bed10ba3aa647ee6ad18be3066baaa0275114331756ac5a4399e838617636ef6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/flavjack/actions/runs/30146213454" } ] }