NEWS

inti 0.6.7

Rticles
- Fix table conversion when only is present one table
Yupana
Avoid different bar widths
New project template info
Tarpuy
Update budget template

inti 0.6.6 (2024-09-03)

Package
- New function related outliers_remove() => "remove_outliers" to work with formula
- New function related plot_diag() => "plot_diagnostic" to work with formula
Rticles
- Fix Tables and Figures order in final document
Tarpuy
- Change name of the trait tab from abbreviation to trait
- Update traits tab for include two formats: date and mcategorical
- Fix sort of the traits in field book app
- New option for generate the qr-code for each plot

inti 0.6.5 (2024-05-16)

Package
- Include Addins for Google authentication and renew process
Rticles
- Fix title position in article
- Fix figure caption and cross reference

inti 0.6.4 (2024-02-05)

Update bootstrap in apps
Tarpuy:
- Alows to exclude or delete {when} or {sample} colums
- Allow defaultValue for traits
Rticles
- Include images using markdown syntax ![]()

=> Fix if "defaultvalue" is in the trait table

inti 0.6.3 (2023-10-27)

gdocs2qmd()
- change params: template ==> theme
- reference-doc: style_rticle.docx
Tarpuy
- Field book design allows different number of rows
- Design without replication (observation plots) ==> design_noreps()
- Fix traits name order

inti 0.6.2 (2023-09-02)

gdocs2qmd()
- Bug with: "Unknown element type at this position: UNSUPPORTED"
- The function works for articles and thesis
- Include the cover page using a table
- Include R markdown templates from RStudio
- Rticles vignettes updated

inti 0.6.1 (2023-05-30)

Tarpuy:
- Include google sheet and docs in PLEX
- Allow empty rows and without filling
- Drop values in sheet traits with "X"
- Only generate traits sheets
- Seed is set by default
Deprecated:
- include_figure()
New function
- include_pdf()
gdocs2qmd()
- Word document with different output structure

inti 0.6.0 (2023-01-24)

Fix for dev dplyr (Thanks @hadley)
tarpuy_plotdesign()
- Autoconvert as factor for plot design
- Default names in plot to "row" and "columns"
New function: design_repblock for "rcbd", "crd" for any factor number
Yupana create by default the sheet locale = "en_US" to use the decimal point
yupana_mvr allow to select specific numeric variables
tarpuy_varlist adapted to field book app
Tarpuy: new module for use the information in Field Book app https://play.google.com/store/apps/details?id=com.fieldbook.tracker
Rename function: tarpuy_varlist ==> tarpuy_traits

inti 0.5.8 (2022-11-16)

gdocs2qmd(format) allow transform to quarto or Rmarkdown format
Update RStudio download link to posit
Yupana - fieldbook module:
- [X] Use "_" or "." to separate the traits factors: yupana_reshape()
- [X] Load and Save in a specific sheet

inti 0.5.7 (2022-08-09)

Update functions bookdown to quarto:
- figure2rmd() ==> figure2qmd()
- table2rmd() ==> table2qmd()
- gdocs2rmd() ==> gdocs2qmd()
Fix plot_raw(): "length(x) = 2 > 1' in coercion to 'logical(1)"
Update jc_tombola()
outliers_remove(drop.na = FALSE) avoid drop NA values by default
H2cal() outliers are changed to NA in the data.frame
yupana_mvr(): update function for correlation and PCA
Yupana: update multivariate analysis

inti 0.5.6 (2022-05-19)

Package: web_table()
- autoWidth = TRUE
- columnwidth argument
- width argument
Fix plot_smr(): "length(x) = 2 > 1' in coercion to 'logical(1)"
New function: split_folder()
Yupana: add scale and method in correlation plot

inti 0.5.5 (2022-04-01)

Yupana: update yupana_import() using if_any() instead across()
Tarpuy: in dsg the column qr ==> barcode
Tarpuy: update sheets names in intro section
Tarypu: export field-book in specific sheet
Tarpuy: select sheet for field-book sketch
Tarpuy: create field-book only with the factor list
Tarpuy: column with [] in design are omitted in the field-book generation
CRAN comments: if (class(model) == "lmerMod") => if ( is(model, "lmerMod")

inti 0.5.4 (2022-02-22)

outliers_remove(): change cbind() by cbind.data.frame().
Fix apps auth.
Thanks to Uwe Ligges to allow consecutive CRAN updates.

inti 0.5.3 (2022-02-18)

Complete location name in experimental information.
Avoid labels in axis and legend using "".
Update vignettes using bookdown.
Fix table summary in H2cal().
Update diagnostic plot in plot_diag() to lm and lmerMod.
Update code for logIn modules in apps.
Update correlation graph in yupana.

inti 0.5.2 (2021-12-19)

Package
- Fix CRAN comments
- Fix path to install Tarpuy dependencies
- Include huito logo in apps
- Fix factors in Tarpuy field-book export
- Update code from tarpuy_design()
- Update barcode column for split using "_"
- Update function tarpuy_plex()

inti 0.5.1 (2021-12-10)

Package
- H2cal(): BLUEs from H2cal may be wrong if other fixed effects in the model (#10).
  - Thanks Jim Holland (@ncsumaize) for the suggestion to improve the function.
- New functions: gdoc2rmd(), table2rmd(), figure2rmd()
  - Use Articul8 Add-ons from Google docs to build Rticles
- Update pkgdown

inti 0.5.0 (2021-11-07)

Changes are incompatible with the old versions.

Package
- yupana_export_smr ==> yupana_export()
  - Extract all the information from yupana_analysis
- yupana_import_smr ==> yupana_import()
  - Import information from the web and yupana_analysis
- Update function H2cal()
Yupana
- Include statistics and anova table in export results
- Clean headers in export data, exclude "{}"
- Update load/save interface
Tarpuy
- Variable list only include arguments with {}
  - You can exclude: {evaluation} or {sampling}

inti 0.4.4 (2021-10-01)

Package
- jc_tombola()
  - Update function and selection paper by meeting
- yupana_analysis()
  - Include last_factor selection
- yupana_mvr()
  - Function not need last_factor
- Include package version in the apps
- Fixed navigation bar in the apps
Yupana
- PCA for individual in the bottom
- Include version in the output table
- Dimension for plots in multivariate analysis

inti 0.4.3 (2021-09-08)

Yupana
- Show equation with adjusted R in scatter plot graph
- sig include all the variables from the summary table
- In plots if the number of reps is 1 the sig and error is "none"

inti 0.4.2 (2021-08-15)

Package
- Include info plot_smr() and plot_raw
- plot_smr()
  - Delete legend border
- Transparent logos background
- New vignette for coding with yupana
- Update Rticles and Books template
- Fix web_table() to export in xlsx
- plot_raw() with scientific notation in labels
- Include new data set potato
Yupana
- Legend position load correct
- Headers with [] are excluded in the analysis

Agradecimiento a Pedro Barriga por sus sugerencias para mejorar yupana()

inti 0.4.1 (2021-06-25)

Package
- plot_smr()
  - Add significance font size
- plot_raw()
  - Allows vector with colors for plots
  - Include "scatter plot"
- H2cal() include trial option for MET
- New video for the version > 0.4.1
Yupana
- Add equations in regressions plot
- Include scatter plot in "Exploratory" module

inti 0.4.0 (2021-05-25)

Changes incompatible with the old versions.

Major changes

Rticles
- Deprecated: create_rticles() & rticles()
- Deprecated shiny app: rticles
- Now you can create your docs using Rmarkdown templates
  - Rticles
  - Books
- Vignette for explain the dependencies to use rticles
Yupana
- Styled messages
- New module: Exploratory
- Update in the modules
  - No need fbsm
  - Reactivity in the analysis
- Export model information
- Overwrite graph info
- Design with 3 factor use facet_grid()
- Allow import/export information for plots
- Reduce font size in the significance
Tarpuy
- Styled messages
- Vignette for explain the modules in the app
- Overwrite fieldbook info
Package
- New function: plot_raw()
  - Box plot graph
- Update function: fieldbook_mvr --> yupana_mvr()
  - Can be used independently
- symbols to internal data
  - Table to create footnotes
- rename functions
- Include new logo
- Vignettes: comparison between H2cal() and asreml
- Add data base for MET
- Logo for the package and apps

Agradecimiento a Khaterine por la idea en el diseño de los logos

inti 0.3.0 (2021-04-24)

Yupana
- Fix {arguments} from xlimits to ylimits
- Update tables style
Rticles
- Update template files
Package
- Vignette for describe the arguments and options in Yupana
- Delete redundant functions info_figure() & info_grahics()
- Update functions: include_figure() & include_figure()
- Update function plot_smr() include:
  - xtext: labels for the x level
  - gtext: labels for the group levels

inti 0.2.0 (2021-04-14)

Changes incompatible with the old versions.

Major changes

Package
- Arguments changed in the syntax for fbsm and graphics.
Yupana
- Delete error messages in console when run the app
- Change dependency: ggpubr --> cowplot
- Multivariate analysis need factor levels n>2
- Allows copy the Statistics table
Yupana
- Delete error messages in console when run the app
- fix dates in experiments
Rticles
- update code for unzip Articul8 files
Package
- ´mean_comparison´ update
  - No remove the treatments column
  - Allows plot 3 factors comparison facet_grid()
  - New arguments for plot: xlimits, xrotation, dimension, opt
  - Delete redundant arguments; limits, brakes
  - Suggest use "*" instead of ":"
  - Include additional layers to the plot. e.g. coord_flip()
  - Save plot dimensions in the exported sheet
- web_table fix resize table in web

Bug fixes

Yupana & Tarpuy
- add pkgs.R file to load dependencies in apps
Tarpuy
- fix auto-install packages in inti::tarpuy(T)

inti 0.1.3 (2021-03-20)

Major changes

Rticles
- update bootstrap
- include code section
Yupana & Tarpuy
- google auth verification
Tarpuy
- Include QR code in fieldbook
Apps
- bslib dependence install from CRAN
- Include video for local installation
- Suppress messages when load apps

inti 0.1.2 (2020-11-25)

Major changes

Package
- Exclude package multtest from the depends
- CRAN error: include_table
- Search engine in the web page

inti 0.1.1 (2020-11-17)

Major changes

Yupana & Tarpuy
- now apps work locally
- update bootstrap
- update packages dependencies for apps
Yupana
- Graphs: button for generate and refresh graphs
- Fieldbook: plot_label in fieldbook summary for label axis in plots
- Analysis: export analysis with sheet name
- Analysis: round digits in export table
Package
- new functions: info_figure() & info_table()
- update pkgdown documentation

Bug fixes

Yupana & Tarpuy
- fix problem with 'cloud.json'
Yupana
- Multivariate: exclude variables without variation in PCA
- Multivariate: exclude columns with all NA values
- Graphs: app not stop if graph arguments are wrong
- update from observeEvent() --> reactive()
rticles
- update app with the new bookdown release

inti 0.1.0 (2020-10-22)

First package release