Package: GerminaR 2.1.6

GerminaR: Indices and Graphics for Assess Seed Germination Process

A collection of different indices and visualization techniques for evaluate the seed germination process in ecophysiological studies (Lozano-Isla et al. 2019) <doi:10.1111/1440-1703.1275>.

Authors:Flavio Lozano-Isla [aut, cre], Omar Benites Alfaro [aut], Marcelo F. Pompelli [aut, ths], Denise Garcia de Santana [aut], Marli A. Ranal [aut], Federal University of Pernambuco [cph], Federal Rural University of Pernambuco [cph], Inkaverse [ctb]

GerminaR_2.1.6.tar.gz
GerminaR_2.1.6.zip(r-4.7)GerminaR_2.1.6.zip(r-4.6)GerminaR_2.1.6.zip(r-4.5)
GerminaR_2.1.6.tgz(r-4.6-any)GerminaR_2.1.6.tgz(r-4.5-any)
GerminaR_2.1.6.tar.gz(r-4.7-any)GerminaR_2.1.6.tar.gz(r-4.6-any)
GerminaR_2.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GerminaR/json (API)
NEWS

# Install 'GerminaR' in R:

install.packages('GerminaR', repos = c('https://flavjack.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/flavjack/germinar/issues

Pkgdown/docs site:https://germinar.inkaverse.com

Datasets:

prosopis - Germination under different osmotic potentials and temperatures.

On CRAN:

germianaquant inkaverse plant-science seed-germination shinyapp

6.91 score 5 stars 90 scripts 316 downloads 2 mentions 23 exports 69 dependencies

Last updated from:e46e6f3125. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	170
source / vignettes	OK	234
linux-release-x86_64	OK	169
macos-release-arm64	OK	105
macos-oldrel-arm64	OK	128
windows-devel	OK	103
windows-release	OK	111
windows-oldrel	OK	103
wasm-release	OK	129

Exports:%>%fplot ger_ASG ger_boxp ger_CVG ger_GRP ger_GRS ger_GSP ger_intime ger_MGR ger_MGT ger_SDG ger_summary ger_SYN ger_testcomp ger_UNC ger_VGT GerminaQuant gquant_analysis osmp rep_row textcolor webTable

Dependencies:agricolae AlgDesign base64enc bslib cachem cli cluster commonmark cpp11 crosstalk digest dplyr DT evaluate farver fastmap fontawesome fs generics ggplot2 glue gtable highr htmltools htmlwidgets httpuv isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle magrittr MASS memoise mime nlme otel pillar pkgconfig promises purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown S7 sass scales shiny sourcetools stringi stringr tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun xtable yaml

GerminaQuant

Rendered fromGerminaQuant.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2026-04-20
Started: 2020-11-14

GerminaR

Rendered fromGerminaR.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2025-10-20
Started: 2016-07-04

Seed germination process

Flavio Lozano-Isla

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2026-04-21
Started: 2021-06-09

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Plot line or bar graphic	fplot
ArcSin of Germination Percentage	ger_ASG
Boxplot graphic	ger_boxp
Coefficient of Variance of the Mean Germination Time	ger_CVG
Germination Seed Percentage	ger_GRP
Germinated Seed Number	ger_GRS
Germination Speed	ger_GSP
Cumulative sum of germination by period of time for line graphic	ger_intime
Mean Germination Rate	ger_MGR
Mean Germination Time	ger_MGT
Standard deviation of the Mean Germination Time	ger_SDG
Summary of Germination indices	ger_summary
Germination Synchronization Index	ger_SYN
Multiple comparison test	ger_testcomp
Germination Uncertainty	ger_UNC
Variance of the Mean Germination Time	ger_VGT
GerminaQuant for R	GerminaQuant
GerminaQuant data analysis	gquant_analysis
Osmotic potential calculator	osmp
Germination under different osmotic potentials and temperatures.	prosopis
Repeated Rows in a data matrix	rep_row
Colourise text for display in the terminal.	textcolor
Web table	webTable